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With a pending deployment, it sounds like you are doing this in Icinga Director, is that right?
From the activity log, you should just be able to click “Deploy X pending changes” as shown in the below screenshot:
This screen is accessed from the Menu options:
Icinga Director > Activity Log
Under Icinga Director > Automation > Jobs you can configure a config deploy as well. It will automatically kick off deployments at a set interval (if there are changes).
Our environment has 10s-100s of automated host/service changes daily. If you have any “Import Sources” or “Sync Rules” you can also configure these to happen auto-magically as well.